3D structure

PDB id
4L47 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.22 Å

Loop

Sequence
UGCGAAC*GGAGGUAUA
Length
16 nucleotides
Bulged bases
4L47|1|YA|G|1801, 4L47|1|YA|G|1816, 4L47|1|YA|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4L47_302 not in the Motif Atlas
Homologous match to IL_7RQB_070
Geometric discrepancy: 0.0533
The information below is about IL_7RQB_070
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.3
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

4L47|1|YA|U|1798
4L47|1|YA|G|1799
4L47|1|YA|C|1800
4L47|1|YA|G|1801
4L47|1|YA|A|1802
4L47|1|YA|A|1803
4L47|1|YA|C|1804
*
4L47|1|YA|G|1813
4L47|1|YA|G|1814
4L47|1|YA|A|1815
4L47|1|YA|G|1816
4L47|1|YA|G|1817
4L47|1|YA|U|1818
4L47|1|YA|A|1819
4L47|1|YA|U|1820
4L47|1|YA|A|1821

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain YD
50S ribosomal protein L2

Coloring options:


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