IL_4L71_042

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

4L71|1|QA|U|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4L71_042 not in the Motif Atlas

Geometric match to IL_4LFB_046

Geometric discrepancy: 0.1359

The information below is about IL_4LFB_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4L71|1|QA|C|1060
4L71|1|QA|G|1061
*
4L71|1|QA|C|1195
4L71|1|QA|U|1196
4L71|1|QA|G|1197

Current chains

Chain QA

16S Ribosomal RNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QE

30S ribosomal protein S5

Chain QI

30S ribosomal protein S9

Chain QJ

30S ribosomal protein S10

Chain QN

30S ribosomal protein S14 type Z

Chain QX

A-site ASL SufA6

Chain QY

messenger RNA