IL_4L71_096

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

4L71|1|RA|U|1142, 4L71|1|RA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4L71_096 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1184

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4L71|1|RA|C|1018
4L71|1|RA|U|1019
4L71|1|RA|A|1020
4L71|1|RA|A|1021
4L71|1|RA|G|1022
4L71|1|RA|U|1023
4L71|1|RA|G|1024
*
4L71|1|RA|C|1140
4L71|1|RA|U|1141
4L71|1|RA|U|1142
4L71|1|RA|A|1142|||A
4L71|1|RA|A|1143
4L71|1|RA|G|1144

Current chains

Chain RA

23S Ribosomal RNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13