3D structure

PDB id
4L71 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
GAUG*CGC
Length
7 nucleotides
Bulged bases
4L71|1|RA|U|1033
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4L71_098 not in the Motif Atlas
Homologous match to IL_7RQB_041
Geometric discrepancy: 0.106
The information below is about IL_7RQB_041
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_43275.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
30

Unit IDs

4L71|1|RA|G|1031
4L71|1|RA|A|1032
4L71|1|RA|U|1033
4L71|1|RA|G|1034
*
4L71|1|RA|C|1121
4L71|1|RA|G|1122
4L71|1|RA|C|1123

Current chains

Chain RA
23S Ribosomal RNA

Nearby chains

Chain R9
50S ribosomal protein L36
Chain RH
50S ribosomal protein L6
Chain RQ
50S ribosomal protein L16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.0582 s