IL_4L71_142

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4L71|1|RA|C|2111, 4L71|1|RA|G|2112, 4L71|1|RA|U|2113, 4L71|1|RA|G|2115, 4L71|1|RA|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4L71_142 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.2611

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4L71|1|RA|G|2110
4L71|1|RA|C|2111
4L71|1|RA|G|2112
4L71|1|RA|U|2113
4L71|1|RA|A|2114
4L71|1|RA|G|2115
4L71|1|RA|G|2116
4L71|1|RA|A|2117
4L71|1|RA|U|2118
4L71|1|RA|A|2119
4L71|1|RA|G|2120
*
4L71|1|RA|C|2178
4L71|1|RA|C|2179

Current chains

Chain RA

23S Ribosomal RNA

Nearby chains