IL_4L71_190

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4L71_190 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.1483

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4L71|1|XA|G|446
4L71|1|XA|G|447
4L71|1|XA|A|448
4L71|1|XA|C|449
4L71|1|XA|G|450
*
4L71|1|XA|C|483
4L71|1|XA|G|484
4L71|1|XA|G|485
4L71|1|XA|U|486
4L71|1|XA|A|487
4L71|1|XA|C|488

Current chains

Chain XA

16S Ribosomal RNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XP

30S ribosomal protein S16