IL_4L71_237

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4L71_237 not in the Motif Atlas

Geometric match to IL_7RQB_006

Geometric discrepancy: 0.076

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4L71|1|YA|G|188
4L71|1|YA|G|189
4L71|1|YA|A|190
4L71|1|YA|A|191
4L71|1|YA|C|192
4L71|1|YA|U|193
4L71|1|YA|G|194
*
4L71|1|YA|C|201
4L71|1|YA|U|202
4L71|1|YA|C|203
4L71|1|YA|A|204
4L71|1|YA|G|205
4L71|1|YA|U|206
4L71|1|YA|A|207
4L71|1|YA|C|208

Current chains

Chain YA

23S Ribosomal RNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain Y7

50S ribosomal protein L34

Chain Y8

50S ribosomal protein L35

Chain YP

50S ribosomal protein L15