IL_4L71_328

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4L71|1|YA|G|2576, 4L71|1|YA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4L71_328 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.0752

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4L71|1|YA|C|2510
4L71|1|YA|U|2511
4L71|1|YA|C|2512
*
4L71|1|YA|G|2574
4L71|1|YA|C|2575
4L71|1|YA|G|2576
4L71|1|YA|A|2577
4L71|1|YA|G|2578

Current chains

Chain YA

23S Ribosomal RNA

Nearby chains

Chain Y5

50S ribosomal protein L32

Chain YE

50S ribosomal protein L3