IL_4L71_331

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4L71|1|YA|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4L71_331 not in the Motif Atlas

Homologous match to IL_7RQB_101

Geometric discrepancy: 0.1236

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

4L71|1|YA|C|2591
4L71|1|YA|G|2592
*
4L71|1|YA|C|2601
4L71|1|YA|A|2602
4L71|1|YA|G|2603

Current chains

Chain YA

23S Ribosomal RNA

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain Y0

50S ribosomal protein L27

Chain YD

50S ribosomal protein L2

Chain Z8

tRNA acceptor end mimic