3D structure

PDB id
4LEL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
UGCGAAC*GGAGGUAUA
Length
16 nucleotides
Bulged bases
4LEL|1|RA|G|1801, 4LEL|1|RA|G|1816, 4LEL|1|RA|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LEL_126 not in the Motif Atlas
Homologous match to IL_7RQB_070
Geometric discrepancy: 0.1016
The information below is about IL_7RQB_070
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.3
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

4LEL|1|RA|U|1798
4LEL|1|RA|G|1799
4LEL|1|RA|C|1800
4LEL|1|RA|G|1801
4LEL|1|RA|A|1802
4LEL|1|RA|A|1803
4LEL|1|RA|C|1804
*
4LEL|1|RA|G|1813
4LEL|1|RA|G|1814
4LEL|1|RA|A|1815
4LEL|1|RA|G|1816
4LEL|1|RA|G|1817
4LEL|1|RA|U|1818
4LEL|1|RA|A|1819
4LEL|1|RA|U|1820
4LEL|1|RA|A|1821

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA
Chain RD
50S ribosomal protein L2

Coloring options:


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