3D structure

PDB id
4LEL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
AUC*GGUUU
Length
8 nucleotides
Bulged bases
4LEL|1|YA|U|2491
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LEL_322 not in the Motif Atlas
Geometric match to IL_7RQB_094
Geometric discrepancy: 0.1496
The information below is about IL_7RQB_094
Detailed Annotation
Major groove minor groove platform with extra cWW
Broad Annotation
Major groove minor groove platform; mini C-loop
Motif group
IL_92788.2
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
14

Unit IDs

4LEL|1|YA|A|2459
4LEL|1|YA|U|2460
4LEL|1|YA|C|2461
*
4LEL|1|YA|G|2489
4LEL|1|YA|G|2490
4LEL|1|YA|U|2491
4LEL|1|YA|U|2492
4LEL|1|YA|U|2493

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y0
50S ribosomal protein L27
Chain YQ
50S ribosomal protein L16
Chain Z8
tRNA acceptor end mimic

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1642 s