IL_4LF5_045

3D structure

PDB id

4LF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

4LF5|1|A|U|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LF5_045 not in the Motif Atlas

Homologous match to IL_4LFB_046

Geometric discrepancy: 0.1629

The information below is about IL_4LFB_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4LF5|1|A|C|1060
4LF5|1|A|G|1061
*
4LF5|1|A|C|1195
4LF5|1|A|U|1196
4LF5|1|A|G|1197

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain E

ribosomal protein S5

Chain I

ribosomal protein S9

Chain J

ribosomal protein S10

Chain N

ribosomal protein S14