IL_4LF5_056

3D structure

PDB id

4LF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

GU(5MC)ACGCCAUG*UGGGGCGAAGUC

Length

23 nucleotides

Bulged bases

4LF5|1|A|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4LF5|1|A|G|1405
4LF5|1|A|U|1406
4LF5|1|A|5MC|1407
4LF5|1|A|A|1408
4LF5|1|A|C|1409
4LF5|1|A|G|1410
4LF5|1|A|C|1411
4LF5|1|A|C|1412
4LF5|1|A|A|1413
4LF5|1|A|U|1414
4LF5|1|A|G|1415
*
4LF5|1|A|U|1485
4LF5|1|A|G|1486
4LF5|1|A|G|1487
4LF5|1|A|G|1488
4LF5|1|A|G|1489
4LF5|1|A|C|1490
4LF5|1|A|G|1491
4LF5|1|A|A|1492
4LF5|1|A|A|1493
4LF5|1|A|G|1494
4LF5|1|A|U|1495
4LF5|1|A|C|1496

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12