IL_4LF6_056

3D structure

PDB id

4LF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.31 Å

Loop

Sequence

GU(5MC)AC*GAAGUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LF6_056 not in the Motif Atlas

Homologous match to IL_4LFB_058

Geometric discrepancy: 0.0671

The information below is about IL_4LFB_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4LF6|1|A|G|1405
4LF6|1|A|U|1406
4LF6|1|A|5MC|1407
4LF6|1|A|A|1408
4LF6|1|A|C|1409
*
4LF6|1|A|G|1491
4LF6|1|A|A|1492
4LF6|1|A|A|1493
4LF6|1|A|G|1494
4LF6|1|A|U|1495
4LF6|1|A|C|1496

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12