IL_4LF7_047

3D structure

PDB id

4LF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUUGC*GGCACUC

Length

12 nucleotides

Bulged bases

4LF7|1|A|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LF7_047 not in the Motif Atlas

Geometric match to IL_4LFB_048

Geometric discrepancy: 0.1077

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85222.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

4LF7|1|A|G|1124
4LF7|1|A|U|1125
4LF7|1|A|U|1126
4LF7|1|A|G|1127
4LF7|1|A|C|1128
*
4LF7|1|A|G|1143
4LF7|1|A|G|1144
4LF7|1|A|C|1145
4LF7|1|A|A|1146
4LF7|1|A|C|1147
4LF7|1|A|U|1148
4LF7|1|A|C|1149

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

ribosomal protein S9

Chain J

ribosomal protein S10