IL_4LF9_018

3D structure

PDB id

4LF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.28 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LF9_018 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.0529

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4LF9|1|A|G|446
4LF9|1|A|G|447
4LF9|1|A|A|448
4LF9|1|A|C|449
4LF9|1|A|G|450
*
4LF9|1|A|C|483
4LF9|1|A|G|484
4LF9|1|A|G|485
4LF9|1|A|U|486
4LF9|1|A|A|487
4LF9|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

ribosomal protein S4

Chain P

ribosomal protein S16