IL_4LF9_064

3D structure

PDB id

4LF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.28 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LF9_064 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.0403

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4LF9|1|A|G|673
4LF9|1|A|G|674
4LF9|1|A|A|675
4LF9|1|A|A|676
4LF9|1|A|U|677
*
4LF9|1|A|G|713
4LF9|1|A|G|714
4LF9|1|A|A|715
4LF9|1|A|A|716
4LF9|1|A|C|717

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

ribosomal protein S6

Chain K

ribosomal protein S11

Chain R

ribosomal protein S18