3D structure

PDB id
4LFA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.65 Å

Loop

Sequence
GAAACCC*GGACUGAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LFA_020 not in the Motif Atlas
Homologous match to IL_6CZR_131
Geometric discrepancy: 0.1474
The information below is about IL_6CZR_131
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_30149.1
Basepair signature
cWW-L-R-L-R-tWH-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

4LFA|1|A|G|450
4LFA|1|A|A|451
4LFA|1|A|A|452
4LFA|1|A|A|453
4LFA|1|A|C|454
4LFA|1|A|C|455
4LFA|1|A|C|456
*
4LFA|1|A|G|476
4LFA|1|A|G|477
4LFA|1|A|A|478
4LFA|1|A|C|479
4LFA|1|A|U|480
4LFA|1|A|G|481
4LFA|1|A|A|482
4LFA|1|A|C|483

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
ribosomal protein S16

Coloring options:


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