IL_4LFB_011

3D structure

PDB id

4LFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4LFB|1|A|U|244, 4LFB|1|A|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.2

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

4LFB|1|A|C|242
4LFB|1|A|A|243
4LFB|1|A|U|244
4LFB|1|A|C|245
4LFB|1|A|A|246
4LFB|1|A|G|247
*
4LFB|1|A|C|277
4LFB|1|A|G|278
4LFB|1|A|A|279
4LFB|1|A|C|280
4LFB|1|A|G|281
4LFB|1|A|A|282
4LFB|1|A|C|283
4LFB|1|A|G|284

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12

Chain Q

ribosomal protein S17