IL_4LFB_021

3D structure

PDB id

4LFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4LFB|1|A|A|532, 4LFB|1|A|U|534

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4LFB|1|A|G|515
4LFB|1|A|PSU|516
4LFB|1|A|G|517
4LFB|1|A|C|518
4LFB|1|A|C|519
4LFB|1|A|A|520
4LFB|1|A|G|521
*
4LFB|1|A|C|528
4LFB|1|A|G|529
4LFB|1|A|G|530
4LFB|1|A|U|531
4LFB|1|A|A|532
4LFB|1|A|A|533
4LFB|1|A|U|534
4LFB|1|A|A|535
4LFB|1|A|C|536

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain D

ribosomal protein S4

Chain L

ribosomal protein S12