IL_4LFB_029

3D structure

PDB id

4LFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4LFB|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4LFB|1|A|G|662
4LFB|1|A|A|663
4LFB|1|A|G|664
4LFB|1|A|A|665
4LFB|1|A|G|666
*
4LFB|1|A|U|740
4LFB|1|A|G|741
4LFB|1|A|G|742
4LFB|1|A|U|743

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

ribosomal protein S6

Chain O

ribosomal protein S15

Chain R

ribosomal protein S18