IL_4LFB_034

3D structure

PDB id

4LFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4LFB|1|A|G|887
4LFB|1|A|G|888
4LFB|1|A|A|889
4LFB|1|A|G|890
4LFB|1|A|U|891
4LFB|1|A|A|892
4LFB|1|A|C|893
4LFB|1|A|G|894
*
4LFB|1|A|U|905
4LFB|1|A|G|906
4LFB|1|A|A|907
4LFB|1|A|A|908
4LFB|1|A|A|909
4LFB|1|A|C|910

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12