3D structure

PDB id
4LFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GGAAGAAG*UGUAAAC
Length
15 nucleotides
Bulged bases
4LFC|1|A|A|412
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LFC_017 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.08
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

4LFC|1|A|G|409
4LFC|1|A|G|410
4LFC|1|A|A|411
4LFC|1|A|A|412
4LFC|1|A|G|413
4LFC|1|A|A|414
4LFC|1|A|A|415
4LFC|1|A|G|416
*
4LFC|1|A|U|427
4LFC|1|A|G|428
4LFC|1|A|U|429
4LFC|1|A|A|430
4LFC|1|A|A|431
4LFC|1|A|A|432
4LFC|1|A|C|433

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
ribosomal protein S4

Coloring options:


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