3D structure

PDB id
4LFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GACAU*AC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LFC_039 not in the Motif Atlas
Geometric match to IL_4LFB_039
Geometric discrepancy: 0.0869
The information below is about IL_4LFB_039
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_47078.3
Basepair signature
cWW-cWS-L-cWW-L
Number of instances in this motif group
4

Unit IDs

4LFC|1|A|G|993
4LFC|1|A|A|994
4LFC|1|A|C|995
4LFC|1|A|A|996
4LFC|1|A|U|997
*
4LFC|1|A|A|1044
4LFC|1|A|C|1045

Current chains

Chain A
16S rRNA

Nearby chains

Chain N
ribosomal protein S14

Coloring options:


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