IL_4LFC_054

3D structure

PDB id

4LFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUC,GAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFC_054 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1638

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4LFC|1|A|G|1312
4LFC|1|A|U|1313
4LFC|1|A|C|1314
*
4LFC|1|A|G|1323
4LFC|1|A|A|1324
4LFC|1|A|C|1325

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

ribosomal protein S13

Chain S

ribosomal protein S19

Chain U

ribosomal protein THX