IL_4LFZ_017

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1346

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4LFZ|1|QA|G|409
4LFZ|1|QA|G|410
4LFZ|1|QA|A|411
4LFZ|1|QA|A|412
4LFZ|1|QA|G|413
4LFZ|1|QA|A|414
4LFZ|1|QA|A|415
4LFZ|1|QA|G|416
*
4LFZ|1|QA|U|427
4LFZ|1|QA|G|428
4LFZ|1|QA|U|429
4LFZ|1|QA|A|430
4LFZ|1|QA|A|431
4LFZ|1|QA|A|432
4LFZ|1|QA|C|433

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4