IL_4LFZ_088

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CGAG*UCCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_088 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.2089

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4LFZ|1|RA|C|951
4LFZ|1|RA|G|952
4LFZ|1|RA|A|953
4LFZ|1|RA|G|954
*
4LFZ|1|RA|U|963
4LFZ|1|RA|C|964
4LFZ|1|RA|C|965
4LFZ|1|RA|G|966

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RB

5S ribosomal RNA; 5S rRNA

Chain RQ

50S ribosomal protein L16