IL_4LFZ_121

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4LFZ|1|RA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_121 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.1324

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4LFZ|1|RA|C|1686
4LFZ|1|RA|G|1687
4LFZ|1|RA|U|1688
4LFZ|1|RA|A|1689
4LFZ|1|RA|A|1690
4LFZ|1|RA|C|1691
*
4LFZ|1|RA|G|1696
4LFZ|1|RA|G|1697
4LFZ|1|RA|A|1698
4LFZ|1|RA|G|1699
4LFZ|1|RA|A|1700
4LFZ|1|RA|A|1701
4LFZ|1|RA|G|1702

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2