IL_4LFZ_138

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4LFZ|1|RA|C|2111, 4LFZ|1|RA|G|2112, 4LFZ|1|RA|U|2113, 4LFZ|1|RA|G|2115, 4LFZ|1|RA|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_138 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.2879

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4LFZ|1|RA|G|2110
4LFZ|1|RA|C|2111
4LFZ|1|RA|G|2112
4LFZ|1|RA|U|2113
4LFZ|1|RA|A|2114
4LFZ|1|RA|G|2115
4LFZ|1|RA|G|2116
4LFZ|1|RA|A|2117
4LFZ|1|RA|U|2118
4LFZ|1|RA|A|2119
4LFZ|1|RA|G|2120
*
4LFZ|1|RA|C|2178
4LFZ|1|RA|C|2179

Current chains

Chain RA

23S rRNA

Nearby chains