IL_4LFZ_187

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GAAACCC*GGACUGAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_187 not in the Motif Atlas

Geometric match to IL_6CZR_131

Geometric discrepancy: 0.1786

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4LFZ|1|XA|G|450
4LFZ|1|XA|A|451
4LFZ|1|XA|A|452
4LFZ|1|XA|A|453
4LFZ|1|XA|C|454
4LFZ|1|XA|C|455
4LFZ|1|XA|C|456
*
4LFZ|1|XA|G|476
4LFZ|1|XA|G|477
4LFZ|1|XA|A|478
4LFZ|1|XA|C|479
4LFZ|1|XA|U|480
4LFZ|1|XA|G|481
4LFZ|1|XA|A|482
4LFZ|1|XA|C|483

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16