IL_4LFZ_201

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_201 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.1227

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4LFZ|1|XA|C|779
4LFZ|1|XA|A|780
4LFZ|1|XA|A|781
4LFZ|1|XA|A|782
4LFZ|1|XA|C|783
*
4LFZ|1|XA|G|799
4LFZ|1|XA|G|800
4LFZ|1|XA|U|801
4LFZ|1|XA|A|802
4LFZ|1|XA|G|803

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XK

30S ribosomal protein S11

Chain YA

Large subunit ribosomal RNA; LSU rRNA