IL_4LFZ_258

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

AUA*UGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_258 not in the Motif Atlas

Homologous match to IL_7RQB_030

Geometric discrepancy: 0.1261

The information below is about IL_7RQB_030

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4LFZ|1|YA|A|870
4LFZ|1|YA|U|871
4LFZ|1|YA|A|872
*
4LFZ|1|YA|U|905
4LFZ|1|YA|G|906
4LFZ|1|YA|U|907

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YQ

50S ribosomal protein L16

Chain YZ

50S ribosomal protein L25