IL_4LFZ_288

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_288 not in the Motif Atlas

Homologous match to IL_9DFE_060

Geometric discrepancy: 0.511

The information below is about IL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46086.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

4LFZ|1|YA|U|1482
4LFZ|1|YA|G|1483
*
4LFZ|1|YA|C|1506
4LFZ|1|YA|A|1507
4LFZ|1|YA|A|1508
4LFZ|1|YA|C|1509
4LFZ|1|YA|A|1510
4LFZ|1|YA|A|1511
4LFZ|1|YA|G|1512

Current chains

Chain YA

23S rRNA

Nearby chains