IL_4LFZ_333

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_333 not in the Motif Atlas

Homologous match to IL_7A0S_099

Geometric discrepancy: 0.1363

The information below is about IL_7A0S_099

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

4LFZ|1|YA|G|2838
4LFZ|1|YA|G|2839
*
4LFZ|1|YA|U|2878
4LFZ|1|YA|C|2879
4LFZ|1|YA|C|2880

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YR

50S ribosomal protein L17

Chain YT

50S ribosomal protein L19