IL_4LFZ_342

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

UGGGC*GCCUGA

Length

11 nucleotides

Bulged bases

4LFZ|1|QA|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_342 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.368

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4LFZ|1|QA|U|375
4LFZ|1|QA|G|376
4LFZ|1|QA|G|377
4LFZ|1|QA|G|378
4LFZ|1|QA|C|379
*
4LFZ|1|QA|G|384
4LFZ|1|QA|C|385
4LFZ|1|QA|C|386
4LFZ|1|QA|U|387
4LFZ|1|QA|G|388
4LFZ|1|QA|A|389

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16