IL_4LFZ_360

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4LFZ|1|RA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_360 not in the Motif Atlas

Geometric match to IL_5J7L_330

Geometric discrepancy: 0.3423

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4LFZ|1|RA|C|2129
4LFZ|1|RA|U|2130
4LFZ|1|RA|G|2131
4LFZ|1|RA|U|2132
4LFZ|1|RA|G|2133
4LFZ|1|RA|A|2134
4LFZ|1|RA|A|2135
4LFZ|1|RA|C|2136
*
4LFZ|1|RA|G|2155
4LFZ|1|RA|G|2156
4LFZ|1|RA|G|2157
4LFZ|1|RA|A|2158
4LFZ|1|RA|G|2159

Current chains

Chain RA

23S rRNA

Nearby chains