3D structure

PDB id
4LFZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.92 Å

Loop

Sequence
GGAACUCUG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LFZ_378 not in the Motif Atlas
Homologous match to IL_9DFE_066
Geometric discrepancy: 0.0987
The information below is about IL_9DFE_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

4LFZ|1|YA|G|1666
4LFZ|1|YA|G|1667
4LFZ|1|YA|A|1668
4LFZ|1|YA|A|1669
4LFZ|1|YA|C|1670
4LFZ|1|YA|U|1671
4LFZ|1|YA|C|1672
4LFZ|1|YA|U|1673
4LFZ|1|YA|G|1674
*
4LFZ|1|YA|C|1990
4LFZ|1|YA|U|1991
4LFZ|1|YA|G|1992
4LFZ|1|YA|U|1993
4LFZ|1|YA|C|1994

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YE
50S ribosomal protein L3
Chain YO
50S ribosomal protein L14

Coloring options:


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