3D structure

PDB id
4LFZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.92 Å

Loop

Sequence
GGAGC*GCGCCGGUGAAAUAC
Length
20 nucleotides
Bulged bases
4LFZ|1|YA|G|2166, 4LFZ|1|YA|U|2167
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4LFZ|1|YA|G|2124
4LFZ|1|YA|G|2125
4LFZ|1|YA|A|2126
4LFZ|1|YA|G|2127
4LFZ|1|YA|C|2128
*
4LFZ|1|YA|G|2160
4LFZ|1|YA|C|2161
4LFZ|1|YA|G|2162
4LFZ|1|YA|C|2163
4LFZ|1|YA|C|2164
4LFZ|1|YA|G|2165
4LFZ|1|YA|G|2166
4LFZ|1|YA|U|2167
4LFZ|1|YA|G|2168
4LFZ|1|YA|A|2169
4LFZ|1|YA|A|2170
4LFZ|1|YA|A|2171
4LFZ|1|YA|U|2172
4LFZ|1|YA|A|2173
4LFZ|1|YA|C|2174

Current chains

Chain YA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA

Coloring options:

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