IL_4LGT_001

3D structure

PDB id

4LGT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the catalytic domain of RluB in complex with a 21-nucleotide RNA substrate

Experimental method

X-RAY DIFFRACTION

Resolution

1.3 Å

Loop

Sequence

GAA*U(FHU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LGT_001 not in the Motif Atlas

Geometric match to IL_4WF9_047

Geometric discrepancy: 0.3479

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4LGT|1|E|G|2588
4LGT|1|E|A|2589
4LGT|1|E|A|2590
*
4LGT|1|E|U|2604
4LGT|1|E|FHU|2605
4LGT|1|E|C|2606

Current chains

Chain E

stem-loop of 23S rRNA

Nearby chains

Chain A

Ribosomal large subunit pseudouridine synthase B

Chain D

Ribosomal large subunit pseudouridine synthase B