3D structure

PDB id
4LNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.94 Å

Loop

Sequence
CGGCCAAC*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LNT_020 not in the Motif Atlas
Homologous match to IL_5J7L_024
Geometric discrepancy: 0.0698
The information below is about IL_5J7L_024
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

4LNT|1|QA|C|504
4LNT|1|QA|G|505
4LNT|1|QA|G|506
4LNT|1|QA|C|507
4LNT|1|QA|C|508
4LNT|1|QA|A|509
4LNT|1|QA|A|510
4LNT|1|QA|C|511
*
4LNT|1|QA|G|540
4LNT|1|QA|G|541

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QD
30S ribosomal protein S4
Chain QL
30S ribosomal protein S12

Coloring options:


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