3D structure

PDB id
4LNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.94 Å

Loop

Sequence
GU*AUAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LNT_025 not in the Motif Atlas
Homologous match to IL_5J7L_029
Geometric discrepancy: 0.0806
The information below is about IL_5J7L_029
Detailed Annotation
Major groove minor groove platform; mini C-loop
Broad Annotation
No text annotation
Motif group
IL_68140.3
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
19

Unit IDs

4LNT|1|QA|G|597
4LNT|1|QA|U|598
*
4LNT|1|QA|A|640
4LNT|1|QA|U|641
4LNT|1|QA|A|642
4LNT|1|QA|C|643

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QH
30S ribosomal protein S8
Chain QQ
30S ribosomal protein S17

Coloring options:


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