3D structure

PDB id
4LNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.94 Å

Loop

Sequence
UGAGUAG*CGAAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LNT_066 not in the Motif Atlas
Homologous match to IL_7RQB_007
Geometric discrepancy: 0.0595
The information below is about IL_7RQB_007
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_76042.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

4LNT|1|RA|U|239
4LNT|1|RA|G|240
4LNT|1|RA|A|241
4LNT|1|RA|G|242
4LNT|1|RA|U|243
4LNT|1|RA|A|244
4LNT|1|RA|G|245
*
4LNT|1|RA|C|253
4LNT|1|RA|G|254
4LNT|1|RA|A|255
4LNT|1|RA|A|256
4LNT|1|RA|A|257
4LNT|1|RA|G|258

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R8
50S ribosomal protein L35
Chain RP
50S ribosomal protein L15

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.6067 s