3D structure

PDB id
4LNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.94 Å

Loop

Sequence
AUGAGUAA*UGAAAUU
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LNT_107 not in the Motif Atlas
Homologous match to IL_7RQB_049
Geometric discrepancy: 0.044
The information below is about IL_7RQB_049
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.7
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

4LNT|1|RA|A|1262
4LNT|1|RA|U|1263
4LNT|1|RA|G|1264
4LNT|1|RA|A|1265
4LNT|1|RA|G|1266
4LNT|1|RA|U|1267
4LNT|1|RA|A|1268
4LNT|1|RA|A|1269
*
4LNT|1|RA|U|2011
4LNT|1|RA|G|2012
4LNT|1|RA|A|2013
4LNT|1|RA|A|2014
4LNT|1|RA|A|2015
4LNT|1|RA|U|2016
4LNT|1|RA|U|2017

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R5
50S ribosomal protein L32
Chain RF
50S ribosomal protein L4
Chain RR
50S ribosomal protein L17
Chain RW
50S ribosomal protein L22

Coloring options:


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