3D structure

PDB id
4LNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.94 Å

Loop

Sequence
GGAAGAAG*UGUAAAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LNT_190 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.1099
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

4LNT|1|XA|G|409
4LNT|1|XA|G|410
4LNT|1|XA|A|411
4LNT|1|XA|A|412
4LNT|1|XA|G|413
4LNT|1|XA|A|414
4LNT|1|XA|A|415
4LNT|1|XA|G|416
*
4LNT|1|XA|U|427
4LNT|1|XA|G|428
4LNT|1|XA|U|429
4LNT|1|XA|A|430
4LNT|1|XA|A|431
4LNT|1|XA|A|432
4LNT|1|XA|C|433

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XD
30S ribosomal protein S4

Coloring options:


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