3D structure

PDB id
4LNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.94 Å

Loop

Sequence
CUAAGUG*CUUAAG
Length
13 nucleotides
Bulged bases
4LNT|1|YA|U|1142, 4LNT|1|YA|A|1143
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LNT_272 not in the Motif Atlas
Homologous match to IL_4WF9_039
Geometric discrepancy: 0.088
The information below is about IL_4WF9_039
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_57188.5
Basepair signature
cWW-tWW-L-tWW-cWW-cSH
Number of instances in this motif group
5

Unit IDs

4LNT|1|YA|C|1018
4LNT|1|YA|U|1019
4LNT|1|YA|A|1020
4LNT|1|YA|A|1021
4LNT|1|YA|G|1022
4LNT|1|YA|U|1023
4LNT|1|YA|G|1024
*
4LNT|1|YA|C|1140
4LNT|1|YA|U|1141
4LNT|1|YA|U|1142
4LNT|1|YA|A|1142|||A
4LNT|1|YA|A|1143
4LNT|1|YA|G|1144

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y9
50S ribosomal protein L36
Chain YH
50S ribosomal protein L6
Chain YN
50S ribosomal protein L13

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