3D structure

PDB id
4LNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.94 Å

Loop

Sequence
CGU*AGUG
Length
7 nucleotides
Bulged bases
4LNT|1|YA|G|1248
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LNT_278 not in the Motif Atlas
Homologous match to IL_7RQB_045
Geometric discrepancy: 0.0746
The information below is about IL_7RQB_045
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_52767.4
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

4LNT|1|YA|C|1196
4LNT|1|YA|G|1197
4LNT|1|YA|U|1198
*
4LNT|1|YA|A|1247
4LNT|1|YA|G|1248
4LNT|1|YA|U|1249
4LNT|1|YA|G|1250

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YF
50S ribosomal protein L4
Chain YP
50S ribosomal protein L15
Chain YU
50S ribosomal protein L20

Coloring options:


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