3D structure

PDB id
4LNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.94 Å

Loop

Sequence
CGAUGGUAC*GGAGAGUAG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LNT_344 not in the Motif Atlas
Homologous match to IL_7RQB_115
Geometric discrepancy: 0.0507
The information below is about IL_7RQB_115
Detailed Annotation
Bacterial 5S Loop E
Broad Annotation
Loop E
Motif group
IL_56455.3
Basepair signature
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4LNT|1|YB|C|71
4LNT|1|YB|G|72
4LNT|1|YB|A|73
4LNT|1|YB|U|74
4LNT|1|YB|G|75
4LNT|1|YB|G|76
4LNT|1|YB|U|77
4LNT|1|YB|A|78
4LNT|1|YB|C|79
*
4LNT|1|YB|G|97
4LNT|1|YB|G|98
4LNT|1|YB|A|99
4LNT|1|YB|G|100
4LNT|1|YB|A|101
4LNT|1|YB|G|102
4LNT|1|YB|U|103
4LNT|1|YB|A|104
4LNT|1|YB|G|105

Current chains

Chain YB
5S rRNA

Nearby chains

Chain YA
Large subunit ribosomal RNA; LSU rRNA
Chain YQ
50S ribosomal protein L16
Chain YZ
50S ribosomal protein L25

Coloring options:


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