3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
GAGUG*CUC
Length
8 nucleotides
Bulged bases
4LSK|1|RA|A|1088
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LSK_101 not in the Motif Atlas
Geometric match to IL_5D8H_003
Geometric discrepancy: 0.2865
The information below is about IL_5D8H_003
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
No text annotation
Motif group
IL_51387.2
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
20

Unit IDs

4LSK|1|RA|G|1087
4LSK|1|RA|A|1088
4LSK|1|RA|G|1089
4LSK|1|RA|U|1090
4LSK|1|RA|G|1091
*
4LSK|1|RA|C|1100
4LSK|1|RA|U|1101
4LSK|1|RA|C|1102

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R9
50S ribosomal protein L36

Coloring options:


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