IL_4LSK_142

3D structure

PDB id

4LSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.48 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4LSK|1|RA|G|2112, 4LSK|1|RA|U|2113, 4LSK|1|RA|G|2115

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LSK_142 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.2525

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4LSK|1|RA|G|2110
4LSK|1|RA|C|2111
4LSK|1|RA|G|2112
4LSK|1|RA|U|2113
4LSK|1|RA|A|2114
4LSK|1|RA|G|2115
4LSK|1|RA|G|2116
4LSK|1|RA|A|2117
4LSK|1|RA|U|2118
4LSK|1|RA|A|2119
4LSK|1|RA|G|2120
*
4LSK|1|RA|C|2178
4LSK|1|RA|C|2179

Current chains

Chain RA

23S rRNA

Nearby chains