IL_4LSK_163

3D structure

PDB id

4LSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.48 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4LSK|1|RA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LSK_163 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0835

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4LSK|1|RA|G|2737
4LSK|1|RA|A|2738
4LSK|1|RA|U|2739
4LSK|1|RA|A|2740
4LSK|1|RA|A|2741
4LSK|1|RA|C|2742
*
4LSK|1|RA|G|2762
4LSK|1|RA|G|2763
4LSK|1|RA|A|2764
4LSK|1|RA|A|2765
4LSK|1|RA|G|2766
4LSK|1|RA|C|2767

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13